publish-linkml

Generate a LinkML schema from a COGS model.

This publisher maps the COGS model into a LinkML-oriented representation for schema exchange and downstream tooling in ecosystems that use LinkML. Classes remain PascalCase; global slot keys and their explicit slot_uri terms use the shared camelCase RDF property convention.

Arguments

[cogsLocation]

Directory containing the model.

[targetLocation]

Directory where the LinkML YAML will be written.

Flags

-?, -h, --help

Show command help.

-o, --overwrite

Overwrite the target directory.

-n, --namespace

Override the target namespace URI and effective RDF slot-term base.

-p, --namespacePrefix

Override the target namespace prefix.

--name

Override the LinkML schema name. A value that can be represented safely is normalized with a LNK2003 warning; namespace-prefix conflicts likewise receive a stable projection warning.

Example

cogs publish-linkml --overwrite --name MySchema MyModel output/linkml

See also

• LinkML Generation